Will a manual transmission out of 4cly VW work in automatic vr6?

No, a manual transmission from a 4-cylinder VW will not work in an automatic VR6. The two transmissions have different bellhousings and different input shafts. The manual transmission bellhousing is designed to fit the 4-cylinder engine block, while the automatic transmission bellhousing is designed to fit the VR6 engine block. The input shaft of the manual transmission is also different from the input shaft of the automatic transmission. The manual transmission input shaft is designed to mate with the clutch disc, while the automatic transmission input shaft is designed to mate with the torque converter.