Here's why it's so complex and what's involved:
* Transmission: You'll need a complete manual transmission assembly (including the bellhousing) compatible with the 2.5L 4-cylinder engine. This isn't a direct swap; the automatic and manual transmissions have different bellhousing bolt patterns and physical dimensions.
* Clutch System: You'll need a clutch assembly (pressure plate, clutch disc, throw-out bearing), clutch pedal assembly (pedal, hydraulic line, master and slave cylinders), and related linkage. This means modifying the floor to accommodate the clutch pedal.
* Driveshaft: The driveshaft length might need adjustment because the manual transmission's output shaft may be slightly different.
* Wiring Harness: The automatic transmission's wiring harness will be unnecessary, and the engine computer may need reprogramming or modification to correctly interpret inputs without the automatic transmission's sensors.
* Computer: The engine computer may need to be reprogrammed or replaced to account for the change in transmission type.
* Shift Linkage: You'll need the correct shift linkage and components to connect the shifter to the transmission.
* Flywheel: The automatic transmission uses a torque converter; the manual transmission uses a flywheel. This is a critical part that needs to be replaced.
In short: This is not a weekend project. It requires specialized tools, mechanical expertise, and a deep understanding of automotive systems. Unless you have significant experience rebuilding and modifying vehicles, it's strongly recommended you have this work done by a professional mechanic experienced with Jeep Wranglers. Even then, sourcing the correct parts and ensuring everything is compatible can be a challenge.
The cost of parts and labor would likely exceed the value of the vehicle, especially for a 1995 model. You might consider simply buying a Jeep Wrangler that already has a manual transmission if that's your preference.